Open Source Java Scientific/Engineering Software for BSD - Page 5

Auf diesen Seiten finden Sie einen elektronischen Zettelkasten für Ihren Computer, der sich am Arbeitsprinzip des Zettelkastens von Niklas Luhmann orientiert. Mit Hilfe dieses Programms können Sie die tägliche Arbeit mit (wissenschaftlichen) Texten erleichtern und wesentlich effektiver gestalten. Sowohl das Verwalten wichtiger Textstellen, Exzerpte und Zitate als auch die anschließende Verwendung dieser Textsammlung zwecks Textproduktion werden durch den Zettelkasten erheblich vereinfacht.

FreeLIMS is a Laboratory Information Management System ( LIMS ). Manage samples; create sample types from methods & parameters; easily generate reports & certificates; fine tune user rights. FreeLIMS is Open Source and Free.

Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.

The DEPRECATED legacy of the Gene Ontology project on SourceForge. Please see http://geneontology.org for current software and downloads.

ImageToGerber makes it easy to convert any image to gerber files, ready to send to a PCB manufacturer. More info at: https://www.imagetopcb.com Demo video: https://youtu.be/HUvt0mOHv_M Forget about spending long hours etching and drilling at home, or learning to use complicated CAD software, schematics, layout design,… And more importantly, ImageToPCB is more than just a converter, it expands the potential of your design or image. It unlocks the possibility to easily make improvements and updating your design, as you will be able to make design modifications, add a silkscreen layer, resize drill diameters, create a soldermask layer to protect copper areas and to avoid accidental shorts, convert a single-side design into a double-side or multi-layer design,… all that just by editing your image with your preferred image editor.

Parallel Spectral Deconvolution is a multithreaded ImageJ plugin for spectral image deblurring.

PhyloSort sorts phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units.

Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface.

mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.

Docear (pronounced dog-ear) is what we call an “academic literature suite”. It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology and developed by scientists from around the world, among others from OvGU, and the University of California, Berkeley.

The development community in building GIS solutions is sustaining an enormous level of effort. The GeoAPI project aims to reduce duplication and increase interoperability by providing neutral, interface-only APIs derived from OGC/ISO Standards.

Translating subtitles in format SubRip from one natural language to other. It is based on Google Translate without API and therefore without payment. Translator have automatic and manual spell checkers.

DataMelt (or "DMelt") is an environment for numeric computation, data analysis, computational statistics, and data visualization. This Java multiplatform program is integrated with several scripting languages such as Jython (Python), Groovy, JRuby, BeanShell. DMelt can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Neural networks and various data-manipulation methods are integrated using powerful Java API. Elements of symbolic computations using Octave/Matlab scripting are supported.

jamod is an object oriented implementation of the Modbus protocol, realized 100% in Java. It allows to quickly realize master and slave applications in various transport flavors (IP and serial).

AtomicJ is an application for analysis of force microscopy recordings, including images and force curves. It allows for fast and reliable processing of single force curves and force maps, providing estimation of the mechanical properties of the sample. AtomicJ supports a wide range of contact mechanics models, including the models for blunt tips, the corrections for the effect of finite sample thickness, models of adhesive contact and models of spherical indentation of hyperelastic material. It implements novel procedures for analysis of force curves which allow for greater resistance to model deviations. AtomicJ can process force maps, it generates maps of Young’s modulus, adhesion force, transition indentation, sample height and the deformation. The results of force maps processing can be visualized in 3D.

Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa

JEuclid is a complete MathML rendering solution, consisting of: a MathViewer application, command line converters from MathML to other formats, an ant task for autmated conversion, display components for AWT and Swing and a component for Apache Cocoon

An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).

Dioscuri is an x86 computer hardware emulator written in Java. It is designed by the digital preservation community to make sure that documents and programs from the past can still be accessed in the future. Dioscuri is durable and component-based.

Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server.

openSCADA is an open source Supervisory Control And Data Acquisition System. It is platform independent and based on a modern system design that provides security and flexibility at the same time. openSCADA is flexible. It is not an out of the box solution, but a set of tools that can be combined in many different ways. It provides development libraries, interface applications, mass configuration tools, front-end and back-end applications. openSCADA is ready to rock. It is used 24/7 in several installations around this world. openSCADA is supported. So if you prefer a fully supported, out of the box instead of a “build it yourself” solution you can contact IBH SYSTEMS GmbH and let us do the job. If you like, you will still get the source code that was developed specially for you. openSCADA needs you. Writing source code, writing documentation, fixing bugs or providing fresh input. Anything is welcome.

A program for organizing and commenting textual citations from texts (books, articles or other published works) for use in producing scientific or academic publications. Works together with EndNote, RefWorks and BibTeX. Exports to PDF and Word (RTF).

OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm.

A cross-platform, graphical, low level (APDU) smart card tool aimed to help developing of smart card applications and understanding of ISO-7816 protocol.

The BioLemmatizer is a domain-specific lemmatization tool for the morphological analysis of biomedical literature. It is tailored to the biological domain through integration of several published lexical resources related to molecular biology. It focuses on the inflectional morphology of English, including the plural form of nouns, the conjugations of verbs, and the comparative and superlative form of adjectives and adverbs. README: https://sourceforge.net/projects/biolemmatizer/files/ The BioLemmatizer 1.2 release adds an optional functionality to normalize British English spellings into American English spellings and then retrieve corresponding lemmas. If you use the BioLemmatizer to support academic research, please cite the following paper: Haibin Liu, Tom Christiansen, William A Baumgartner Jr, and Karin Verspoor BioLemmatizer: a lemmatization tool for morphological processing of biomedical text Journal of Biomedical Semantics 2012, 3:3.