Open Source Linux Research Software - Page 2

Overhead Imagery Research Data Set (OIRDS) - an annotated data library & tools to aid in the development of computer vision algorithms

These are two C++ libraries for symbolic, numeric and graphical manipulations in non-Euclidean geometry. There is GUI which allows to interact with these libraries by mouse clicks. On a dipper level the first library Cycle implements basic operations on cycles (quadrics) through FSCc construction. The second library Figure operates on ensembles of cycles connected by Moebius-invariant relations, e.g. orthogonality. Both libraries are based on the Clifford algebra capacities of the GiNaC computer algebra system (http://ginac.de). Besides C++ libraries there is a Python wrapper, which can be used in interactive mode (https://codeocean.com/capsule/7952650/). Both libraries work in arbitrary dimensions and signatures of metric. Additionally, there are some 2D/3D-specific routines including a visualisation to PostScript files through Asymptote (http://asymptote.sourcefourge.net) software. The source is written in literate programming NoWeb.

GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying special attention to interpretability issues. GUAJE lets the user define expert variables and rules, but also provide supervised and fully automatic learning capabilities. Both types of knowledge, expert and induced, are integrated under the expert supervision, ensuring interpretability, simplicity and consistency of the knowledge base along the whole process. Notice that, GUAJE is is an upgraded version of the free software called KBCT (Knowledge Base Configuration Tool).

This project defines the Simple API for Binary REpresentations (SABRE) for processing hierarchically structured, binary-oriented documents, comparable to the Simple API for XML (SAX). The library is e.g. used in the Java ISO Image Creator (JIIC).

Create phyiscal simulations easily through IPSA which combines the OpenInventor 3D API with the Open Dynamics Engine (ODE). Scenes are read from .iv files and simulated in the supplied viewer applications. Find it at: http://ipsa.sourceforge.net

Fuzzy machine learning framework is a library and a GUI front-end for machine learning using intuitionistic fuzzy data. The approach is based on the intuitionistic fuzzy sets and the possibility theory. Further characteristics are fuzzy features and classes; numeric, enumeration features and features based on linguistic variables; user-defined features; derived and evaluated features; classifiers as features for building hierarchical systems; automatic refinement in case of dependent features; incremental learning; fuzzy control language support; object-oriented software design with extensible objects and automatic garbage collection; generic data base support through ODBC or SQLite; text I/O and HTML output; an advanced graphical user interface based on GTK+; and examples of use.

Library for fingerprinting (decomposition) of chemical compounds. It has several tweaking possibilities and exporting options for data mining toolkits.

libtdms is a C++ library for reading National Instruments TDMS files (http://www.ni.com/white-paper/3727/en).

extJWNL (Extended Java WordNet Library) is a Java API for creating, reading and updating dictionaries in WordNet format. extJWNL is an upgraded version of JWNL. The library features support for creating, editing and writing dictionaries; dictionary encodings, including UTF-8; Java generics; huge dictionaries; instance dictionaries and static singletone dictionary; Maven and more.

LaTeX2MathML is a PHP5 class that converts LaTeX math formulas to Presentation MathML. Current versions are still in development !

Fortran binding for GMP library. Currently gfortran compiler supported on Linux and MS Windows (MinGW) platforms. Included Fortran program for solving Archimedes's cattle problem.

MSR Tools is a source code evolution analysis tool. It consists of a framework for mining software repositories and tools for metric calculation, visualization, defect prediction.

xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). More detailed description as well as documentation can be found at webpage http://xrayutilities.sourceforge.io/. Downloads for windows can be found on http://pypi.python.org/pypi/xrayutilities Development is performed on github: https://github.com/dkriegner/xrayutilities

The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and Finite Radon Transform (FRT). Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance.

A cross-platform text analysis program written in Python and Free Pascal/Lazarus which scans a whole text file (in plain text, HTML, EPUB, or ODT formats) and ranks all used words according to frequency, performing a quantitative analysis of the text using Shannon-Weaver information statistic and Zipf power law function. It counts words, sentences, chars, spaces, and syllables. Also computes readability indexes (Gunning-Fog, Coleman-Liau, Automated Readability Index (ARI), SMOG grade, Flesch–Kincaid grade level and Flesch Reading Ease).

Navmol is a software that allows people that are blind or visually impaired to navigate and edit molecular structures in a simple and intuitive way.

Modular application for biomedical data processing.

- - - T H I S P R O J E C T M O V E D T O G I T H U B - - - A framework for the implementation of advanced real-time control systems which uses signal/block-based schematics (like Simulink) extended by several features like state machines and online-exchangeable sub-simulations. Besides, this framework properly handles multiple threads, their communication, allows to synchronise control systems to external events (e.g. variable timers or incoming network packages) and provides many other nice features. Because of a high-level schematic-description language -- in form of provided Scilab commands -- only a minimal implementation-effort (no error-prone C-programming) is required.

Project to use lib GRAPHIC: ALLEGRO SDL gokernel gokernel@hotmail.com

A prototype system designed to aid in the identification of handwriting, particularly medieval, following the principles outlined at http://www.digitalmedievalist.org/journal/3/stokes/ and in forthcoming publications.

This is a MATLAB implementation of inverse compositional Active Appearance Models (AAMs), as described in the "Active Appearance Models Revisited" paper by Iain Matthews and Simon Baker.

OpenAxiom is an open source Computer Algebra System. It offers an interactive environment, an expressive programming language, a compiler, a large set of mathematical libraries of interest to researchers and practitioners of computational sciences.

The BioloidNativeInterface is a C++ library to control bioloid/dynamixel modules including AX12, AXS1. It provides a parser for the bioloid protocoll and methods to read/write packets.

Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .