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From kmer
Suite of tools for DNA sequence analysis - searching (EST, mRNA, sequencer reads); aligning (ESTs, mRNA, whole genome); and analysis (repeats, kmers).
- The main sourceforge project page.
- The Bug and Feature tracker.
- There are no released downloads at this time, use Subversion to download the code instead.
Contents |
ESTmapper
High-throughput cDNA to genomic alignments, a powerful k-mer based filter coupled with sim4.
- Getting Started with ESTmapper
- ESTmapper Documentation (Much nicer PDF version.)
- A poster presented at GSAC 2005.
Snapper
- nothing yet
Meryl
Meryl is a k-mer counter that works for any amount of sequence and any size of k....given enough disk space.
A2Amapper, ATAC, Assembly To Assembly Comparison
ATAC is a computational process for comparative mapping between two genome assemblies, or between two different genomes. The outcome of this process is a genome-wide list of assembly-to-assembly anchors and blocks.
LEAFF
LEAFF (ahem, Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions.
