Yuqing Jin

Hi Pasi, It is benefit a lot to go through the discussion, and I can find out a lot help. I am still confused by the argument minError and the outut result Likelihoods and the value of COUNT. For example, when I set the minError=0.01, I got a very long LG length, such as 4000cM , but the Likelihood is -2000, the value of COUNT is 1900. when I set minError=0.3, I got a short LG length, such as 1000cM , but the Likelihood is -12,000, the value of COUNT is 3400. I went through what you talked before,...

Hi Pasi, It is benefit a lot to go through the discussion. I am still confused by the argument minError and the outut result Likelihoods and the value of COUNT. For example, when I set the minError=0.01, I got a very long LG length, such as 4000cM , but the Likelihood is -2000, the value of COUNT is 1900. when I set minError=0.3, I got a short LG length, such as 1000cM , but the Likelihood is -12,000, the value of COUNT is 3400. I went through what you talked before, I known that the minError can...

Hi Pasi, Can LEPMAP3 do the analysis on the Segregation distortion ? And can i use this software add the segregation distortion loci to the pre-existing linkage map? Best regards, yuqing

Hi Pasi， I nearly finished dealing with my data using LM2, which give me several a little bit considerable results. And i still want find the most accurate order of these markers, as it is difficult to identify which filter parameters is the best through the heatmap only. i have 141 individuals and more than 45000 markers (unfortunately, I only have the infomation of genotype likelihoods in each loci among 141 individuals, that mean these genotype are respected as 0(missing), 1, 2 ). now, I want...