Sunidhi

Did that. Yet another error popped up which I reported in another thread. On Mon, May 11, 2020 at 6:03 AM Ismael Rodriguez Espigares ismresp@users.sourceforge.net wrote: Hi Sunidhi, The root of the error is in here: ERROR) BaseMolecule: attempt to init atoms while structure building in progress! ERROR) Invalid number of atoms in file: 132423 Info) Using plugin xtc for coordinates from file /home/sunidhi/RA/ABCA1/sim1/MD1_17_nopbc_norottrans_dt1000.xtc ERROR) Incorrect number of atoms (132423) in...

Hello Some output from MEMBPLUGIN like Membrane thickness --> average thickness plot have options of downloading the generated figure/image in different formats like postscript and xvg. But the average, bottom and top thickness maps generated from "Membrane thickness" are displayed just as images with title "tmap". I want to download these images in postscript format or high-dpi images. Kindly suggest how to do that.

Hey Ismael I generated a psf file from my trajectory file (by converting one frame to pdb and then using the pdb to generate the psf). Even then the same error pops up: Error: vecdot needs vectors of the same size: 0 0 1 : vecdot needs vectors of the same size: 0 0 1 : Can you please help??

I did. But nothing mentioned in this, seems to solve the problem. On Sun, 26 Apr 2020, 13:04 Ismael Rodriguez Espigares, ismresp@users.sourceforge.net wrote: Please check the following thread: https://sourceforge.net/p/membplugin/discussion/general/thread/c5f77873/#4ac9/2b18 Ismael. Error while running Lipid Tilt angle using a GRO file (duplicated) https://sourceforge.net/p/membplugin/discussion/general/thread/1c7873b7fc/?limit=25#1c99 Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/membplugin/discussion/general/...

Hello I have a protein-lipid simulated system. I tried to calculate the lipid tilt angle between POPI lipids by giving the psf file as structure and xtc file as trajectory. The following error showed up: Something went wrong. Command: lipidtilt -structure /home/sunidhi/RA/ABCA1/sim1/wholepsf_withoutwater.psf -trajectory /home/sunidhi/RA/ABCA1/sim1/MD1_17_nopbc_norottrans_dt1000.xtc -lipid {CHL1 POPI PSM LLPC SM18 DLPA DLPC DLPE DLPG DLPS DMPA DMPC DMPE DMPG DMPS DPPA DPPC DPPE DPPG DPPS DSPA DSPC...

This is the log file of the error: Something went wrong. Command: lipidtilt -structure /home/sunidhi/RA/ABCA1/sim1/POPI_conv.psf -trajectory /home/sunidhi/RA/ABCA1/sim1/MD1_17_nopbc_norottrans_dt1000.xtc -lipid {CHL1 SM18 DLPA DLPC DLPE DLPG DLPS DMPA DMPC DMPE DMPG DMPS DPPA DPPC DPPE DPPG DPPS DSPA DSPC DSPE DSPG DSPS POPA POPC POPE POPG POPS SOPA SOPC SOPE SOPS SOPG DOPA DOPC DOPE DOPG DOPS SAPA SAPC SAPE SAPG SAPS SDPA SDPC SDPE SDPG SDPS DAPA DAPC DAPE DAPG DAPS DXPC DXPE DXPS PLPC PLPE PLPS...