Steven S

Unless there are multiple locations in that repository that reference output flags, I wasn't able to get the output to actually change when running the simulation. Before the first iteration (in my 1.13.1 folder) I am now seeing a new error: ERROR : Unknown parameter oncoprotein_min ! Quitting. Looking through the custom modules, it looks like it is called in the heterogeneity_coloring_function in heterogeneity.cpp, specifically: ` static int oncoprotein_i = pCell->custom_data.find_variable_index("oncoprotein");...

g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 I ran the heterogeneity-sample project as well and it ran smoothly. I realize the simulation from the literature had several custom modules and adjusted settings for their model; however, when running that simulation, I noticed the output file sizes were considerably large for the time-steps it was able to run (>2.0GB for a "cells.mat" file). The entire output folder for the heterogeneity-sample simulation was right at 2.0GB. In my case, does the segmentation...

In my efforts to get the model from the literature working, I installed any packages that patched errors returned when attempting to compile/build/run the simulation. I am trying to slowly climb the learning curve, so I'm not sure what packages or model parameters directly affect the performance of my machine. At this point, it seems like I may need to build the model from scratch (something I hoped to do after more experience) to better capture the behavior of our cells anyway. What puzzled me was...

Segmentation Fault (core dumped) | PhysiCell 1.13.1 & 1.7.1 | Virtual Box running Ubuntu 22.04.3 LTS