Sam Kim

Hi Randy, sorry to stir a pot that has already boiled over, but just to prevent problems in the future -- I see that there are also dFBA and PhysiBoss add-ons, and I do not think those are arm64-compatible either. Our team is planning to use PhysiCell as a primary ABM to tackle many problems in the future, and we just wanted to ensure there wouldn't be problems down the line due to these add-ons. I don't want to add more work to your plate as I know it already took many hours to fix the roadrunner,...

Thanks Randy, I just tried it and got it to compile and run. I did the following steps that might be useful to new users: Added a missing "rcc_macros.h" file (which I just copied over from the original libroadrunner file, without any problems) export DYLD_LIBRARY_PATH=/Users/heiland/roadrunner/install-Release/lib as you recommended (replacing heiland with my user) brew install llvm And that did it. Thanks again for all your help. I really appreciate it. Sam

Hi Randy, Thanks for working so hard on this, my team really appreciates it. We were just wondering if by editing the attached Make-ode-sample, you meant the Makefiles present in the intracellular samples already or if there should be an attached file (that I do not see in the file you have sent.) I tried editing the Makefiles that I already have but it's giving me fresh new errors, so was just wondering. Again, we really appreciate your work on this, thanks very much. Best, Sam

Hi Randy, hope you are well. Is there any update on this error? I appreciate it. Thanks, Sam

No problem Randy, thanks for your help. Yes, please let me know if there is any update on this, I appreciate it! Sam

Trouble with M1 Make file

Hi Randy, I appreciate your previous help. I ran into another problem when attempting to make ode-energy-sample; I am given the following error. Any help would be greatly appreciated. Your OS= -D OSX LIBRR_CFLAGS= -I./addons/libRoadrunner/roadrunner/include/rr/C LIBRR_LIBS= ./addons/libRoadrunner/roadrunner/lib g++-11 -march=native -O3 -fomit-frame-pointer -fopenmp -m64 -std=c++11 -D ADDON_ROADRUNNER -I./addons/libRoadrunner/roadrunner/include/rr/C -o ode_energy BioFVM_vector.o BioFVM_mesh.o BioFVM_microenvironment.o...

Randy, I tried the code line that you suggested: /opt/homebrew/bin/g++-11 --version Which was successful giving me the following: (base) skim@Sams-MacBook-Pro ~ % /opt/homebrew/bin/g++-11 --version g++-11 (Homebrew GCC 11.2.0_3) 11.2.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Thanks, Sam