Selene Zarate

Hi, I avving some issues when running ./map_vs_ref.pl, which instead of generating the .sam file it sends the content to the log file, which makes other scripts in the pipeline fail. Any ideas, Thanks, Selene

Hi, I used your pieline, but ./map_vs_ref.pl fails to create the.sam file, it prints it out in the log instead, therefore when it tries to generate the consensus it cannot locate the file. Any ideas? Thanks, Selene