rrlove

I've run scalpel-discovery in single mode on 22 samples. The samples were run in parallel with identical commands; this is the discovery command I used: cd ${sample} ~/local/bin/scalpel-0.5.3/scalpel-discovery --single \ --bam ./${sample}.bam \ --bed ${bed} \ --ref ${ref} \ --window 500 \ --logs --mapscore 20 One of those samples is failing repeatedly. The relevant part of the output looks like this: START ANALYSIS -- Print parameters to ./outdir/parameters.txt Loading targets from BED file...12769...

To follow up: as often seems to happen, once I submitted this ticket I discovered...

To follow up: as often seems to happen, once I submitted this ticket I discovered...

Scripts for calculating Dxy

I would like to follow up on this issue. I don't know what changes to the software...