scalpel

Bioinformatics pipeline for discovery of genetic variants from NGS reads.

Features

Support Illumina reads
Detect mutations in one exome
Detect denovo mutation in one family
Detect somatic mutations in tumor/normal pair

Project Samples

Overview of the Scalpel algorithm workflow

Project Activity

See All Activity >

License

MIT License

Follow scalpel

scalpel Web Site

Other Useful Business Software

Build Data Resilience - Take the Assessment Today

Can you recover when it matters most? Take this quick assessment to identify gaps and build greater recovery confidence.

Is your recovery strategy as strong as you think? Take this quick self-assessment to check your recovery readiness and gain tailored insights. In only 2 minutes, you'll learn where you fall on the recovery readiness scale.

Take the Assessment

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

User Reviews

Filter Reviews:

All

hanfang Posted 2014-03-07

Great tool.

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C++, Perl

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software

Registered

2013-10-24

Similar Business Software

OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Geneyx

Geneyx Analysis is a comprehensive solution for next-generation sequencing (NGS) data that can scale the process of FASTQ to clinical reports for hospital and commercial labs. This advanced platform integrates machine learning and AI-based features to identify novel biomedical insights, while...

See Software
Noodle Biomedical Literature Discovery

Noodle is Helena Bioinformatics' free biomedical literature discovery platform for researchers, clinicians reviewing literature, and research software developers. Search by topic or publication identifier, inspect PMID, DOI and PMCID records, discover related papers, and explore citation links...

See Software
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
VSClinical

VSClinical allows for the clinical interpretation of variants based on ACMG & AMP guidelines. The VSClinical guided workflow enables following the American College of Medical Genetics (ACMG) guidelines used to identify and classify causal variants for inherited disease risk, cancer...

See Software
Partek Flow

Partek bioinformatics software delivers powerful statistical and visualization tools in an easy-to-use interface. Researchers of all skill levels are empowered to explore genomic data quicker and easier than ever before. We turn data into discovery®. Pre-installed workflows and pipelines in our...

See Software