Rob Clewley

I think this is fixed in the main branch on github, as per the discussion in https://github.com/robclewley/pydstool/issues/98. You should be using the github version of the package for maximal support on windows. On Wed, Jan 11, 2023 at 5:28 PM Lakshmi Sridhar lnsridhar@users.sourceforge.net wrote: When I run the dae example I get the mwssage An exception has occurred, use %tb to see the full traceback. Traceback (most recent call last): File "C:\Users\LakshmiNSridhar\anaconda3\lib\site-packages\PyDSTool\core\context_managers.py",...

Hi Anthony, Could you please be more specific about exactly what difficulty you're having? Do you have an error message, for instance? If it's running but you're getting the wrong result, could you paste pictures of the desired and current results? Regards, Rob On Mon, Jun 17, 2019 at 3:37 PM Anthony Morciglio amorciglio1@users.sourceforge.net wrote: Hello, I am fairly new to coding (started one month ago for Python, and last week for PyDSTool) and am having difficulty having my code to compile....

Hi. You might be able to use http://www.warrenweckesser.net/vfgen/ but it will depend on what your current code is, exactly. If it's a manually written C function, for instance, you don't have much choice. Keeping math descriptions in program code is not a good long term solution anyway, so if you have to go through the pain of converting it, at least you'll know you're making an investment towards readability and reusability. Let me know what you find, Rob On Fri, Nov 23, 2018 at 2:30 AM Angeles...

Hi, the sol attribute is a PyDSTool Pointset object, so it has indepvararray and coordarray numpy array attributes, which should contain what you need. See https://web.archive.org/web/20171204203340/http://www.ni.gsu.edu:80/~rclewley/PyDSTool/Pointsets.html for more info. On Mon, Nov 12, 2018 at 7:08 PM clas jacobsca@users.sourceforge.net wrote: Everything is working (very) well in PyDSTool (and PyCont). From a PyCont class I want to extract the actual points - how do I do this? PyCont['EQ1'].sol...

Thanks, I appreciate the information. I tried to temporarily update the redirect from sourceforge to the webarchive version but it fails, inexplicably. I'll try to rehost the material on sourceforge directly when I have time. On Tue, Jul 24, 2018 at 11:48 PM Lloyd Wood lloydwood@users.sourceforge.net wrote: Here's the last known webarchive copy: https://web.archive.org/web/20171201062820/http://www.ni.gsu.edu:80/~rclewley/PyDSTool/FrontPage.html PyDsTool website gone? https://sourceforge.net/p/pydstool/discussion/472291/thread/56016ac8/?limit=25#3609...

Hi Maurizio, thanks for your continued interest! Clewley R, Hybrid Models and Biological Model Reduction with PyDSTool, PLoS Computational Biology 8(8): e1002628 (2012) Clewley RH, Sherwood WE, LaMar MD, Guckenheimer JM (2007) PyDSTool, a software environment for dynamical systems modeling. URL http://pydstool.sourceforge.net This info is still available from the Google cache of the original front page and from the waybackmachine's version, https://web.archive.org/web/2/http://www.ni.gsu.edu/~rclewley/pydstool/FrontPage.html...

I will try to re-host the pages on my github account in the near future. Sorry for the unexpected outage. In the meantime, this should be functional, if a bit slow: https://web.archive.org/web/20160331125637/http://www.ni.gsu.edu/~rclewley/PyDSTool/ On Mon, Dec 18, 2017 at 6:16 AM, Maurizio De Pitta' mauriziodepitta@users.sf.net wrote: Uhm ok, there seems to be a renovation going on as I read on the current Fron Page at http://www2.gsu.edu/~matrhc/FrontPage.html Site down Sent from sourceforge.net...

This is definitely a problem, thanks for posting. I've had some success with addressing it here (https://github.com/robclewley/pydstool/pull/128) but it's not complete and I don't know how to proceed right now. Dopri is definitely the superior way in all cases, though ...