paul buscemi

Below is the output from the first commands you suggested. IS this what is anticipated ? Main< (pb) 3 % lappend auto_path usr/home/pb/sesktop/membplugin-release-1.1/membplugin1.1 /usr/local/lib/vmd/scripts/tcl8.5 /usr/local/lib/vmd/scripts /usr/local/lib/lib /Projects/johns/tcl/8.5.6/lib_LINUXAMD64/lib /usr/local/lib/vmd/scripts/tk8.5 /usr/local/lib/vmd/scripts/tk8.5/ttk /usr/local/lib/vmd/scripts/vmd /usr/local/lib/vmd/plugins/LINUXAMD64/tcl /usr/local/lib/vmd/plugins/noarch/tcl /usr/local/lib/vmd/plugins/noarch/tcl/membplugin1.1/tcllib1.15...

What you say is correct, there were two versions. But MEMB did not appear with either v3 or v4 of VMD. In any event, is there perhaps an alternate command line method of accessing the plugin ? thanks Paul

I noticed that MEMB does not recognize the CUDA. But it is installed: nvcc - V does gives the version -9 , and Schrodinger/Desmond sees the GPU as well

pb@MSI ~ $ vmd /usr/local/lib/vmd/vmd_LINUXAMD64: /usr/lib/x86_64-linux-gnu/libGL.so.1: no version information available (required by /usr/local/lib/vmd/vmd_LINUXAMD64) Info) VMD for LINUXAMD64, version 1.9.4a9 (October 19, 2017) Info) http://www.ks.uiuc.edu/Research/vmd/ Info) Email questions and bug reports to vmd@ks.uiuc.edu Info) Please include this reference in published work using VMD: Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual Info) Molecular Dynamics', J. Molec. Graphics...

I did try the temporary run method which also failed.

Thank you for the prompt response. I've tried to be very careful about the installation , and installation for linux seems to be the same as that for OS X and Win which work as described- the demos run nicely. Barring some quirk of Linux Mint ( I've got VMD, and Schrodinger working on the same machine ) then I am missing something obvious. It's not for lack of trying - two different Lixux machines behave similarly . In the meantime is there a command line workaround ? thanks Paul

I've been able to nicely install MEMB plugin on OSx and PC's but following the same directions, the plugin fails to appear in VMD Extensions> Analysis installed in Linux Ubuntu ( where the MD files are located ) Is there an additional step/s for linux installation ? thanks pb