Anjela Manandhar

Thank you for the explanation Toni. Sincerely, Anjela Manandhar Graduate Student Biochemistry Program Graduate Center, City University of New York 365 Fifth Avenue, NY-10016, USA On Mon, Jul 29, 2019 at 3:32 AM Toni tigio@users.sourceforge.net wrote: Dear Anjela, our analysis (hence the code) assumes an “almost planar” bilayer. Yours is pretty strongly curved. What’s happening (as far as I can tell) is that the plane-fitting is failing and so is the upper/lower lipid assignment. Maybe some future...

Hi Ismael, I am calculating total thickness. When I calculate just the average thickness, I am still getting high values (~166A) and thickness map (with total thicknes) have similar values as well. Please let me know if more information is required. Thank you. Sincerely, Anjela Manandhar Graduate Student Biochemistry Program Graduate Center, City University of New York 365 Fifth Avenue, NY-10016, USA On Thu, Jul 25, 2019 at 5:19 PM Ismael Rodriguez Espigares ismresp@users.sourceforge.net wrote: Dear...

Hi, I am trying to use Membplugin for the membrane thickness analysis. My membrane deforms, bends/curves during simulation. When I calculate deformation map, it shows curved area to be thickest (almost double the average thickness of the membrane). Can you please help me with this. Thank you. Sincerely, Anjela