Mitsuko

I think I found the cause of the problem - I removed the X and Y chromosome entries...

I have one more question: I tend to get no segment information from chromosome 1...

Yes, I solved the problem on my own - I needed to specify data.type="log" when calling...

I prepare my vcf files so that normal and tumor samples appear in the 10th and the...

I prepare my vcf files so that normal and tumor samples appear in the 10th and the...

I managed to run getSeg(), getAGP() and getsAGP() to obtain the sAGP data properly,...

When using getSeg(), I tend to get NaN in the mean values: for example, seg.dat=get(load('seg.Rdata'))...