Activity for Matthias Filter
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Matthias Filter modified a wiki page
ginafit
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Tools
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Model Fitting node does not provide rmse, sse, AIC etc for one-step global model fits
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Display se, t, p for estimated parameter values in the Tertiary Model Selection and Predictor View GUI in case of one-step fit
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Feature request: create a node that support the import of model parameters from generic tables
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Feature request: create a PMM2Table export node
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Feature request: allow the user to define which column is displayed as the chart legend
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Feature request: extend the settings saved in charts
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Feature request: create data filter node
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PMM-Lab not compatible with KNIME 3.0
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Combase Reader node - update to new format
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Show literature in Views
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There are now three new nodes: PMF Reader to read PMF zip files SBML Reader to read...
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Create SBML2PMM-Lab Reader
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PMF writer - make it MIRIAM compliant
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Things that should additionally be possible to provide in the PMF Writer user interface...
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Model Writer does not work for secondary models??
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Please consider this issue when creating the proposal for the extended PMM-Lab data...
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Create a SBML Writer node for PMM-Lab applying the guidelines from ticket 272
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The node name has been changed to PMF Writer Instead of an outport this node writes...
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Data Selection node - enable automatic unit assignment
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Perfect!
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Contact Details from the responsible of the model re-implementation
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In the future it would be great if this information together with other currently...
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Comments from Model Editor node missing
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I think the original issue has been perfectly fixed, but this problem illustrated...
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Model Writer do not safe all raw data in case of One-Step Fit
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We should consider to make the necessary adjustments to the DB somewhen.
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Feature request: extend XLS Model / Data Reader
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Perfect!
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Combase Reader node - update to new format
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Temperature seems still to cause problems.
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Perfect!
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Predictor View display all primary models instead of one tertiary model in case of two-step approach
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Tools
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Tools
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Tools
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fishmap
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Predictor View - "Add info to legend" without effect and feature request
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Predictor View display all primary models instead of one tertiary model in case of two-step approach
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the reader works fine with csv-files containing experimental data. However with csv...
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Combase Reader node - update to new format
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It would also be great if one could read in stand-alone secondary models from XLS...
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Extend XLS Data Reader /PMM Joiner to support fitting of "secondary data"
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works perfect!!
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Feature request: extend PMM-Lab XLS Reader nodes to support relative path
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Combase Reader node - update to new format
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fssp
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Feature request: extend XLS Model / Data Reader
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Feature request: extend XLS Model Reader
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Data Writer does not write entries from QualityScore and Checked into DB
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Feature request: extend PMM-Lab XLS Reader nodes to support relative path
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Tools
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Tools
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pmsmp
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Model Writer do not safe all raw data in case of One-Step Fit
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Old Databases not accessible anymore via Model Reader node
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Great!
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Old Databases not accessible anymore via Model Reader node
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OK
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Tertiary Model Selection - calculation of model quality measures fails often
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Great
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XLS Model Reader: Allow to specify categories and units for polynoms
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Model Writer does not work for secondary models??
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Priority is still High
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Model Editor Node Execution
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OK
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Model name automatically created
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XLS Model Reader: Cannot see all parameters in secondary model assignment
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It seems to work! Great
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Model Reader - filter on references include records with empty cells
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PredictorView: show the parameters of the selected model only
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Update list of formulas
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Provide a Unit to error measures like RMSE, MSE etc
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Tools
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Tools
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fishmap
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Model Reader - filter on references include records with empty cells
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Assignment of lag to h0 in Baranyi-type models lead to different results compared to CombasePredictor
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Model Writer does not work for secondary models??
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This feature is important also for PMM-Lab application in QMRA modelling
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Provide a way to include all relevant information into a BIRT report
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Provide information on applied model in the PCML outport view
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FoodProcess node: Model does not automatically have the same settings as in the FoodProcess settings
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Data Selection node - enable automatic unit assignment
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Extend FoodProcess node to support generic process conditions
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Tools
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Workflow creates error message
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Workflow creates error message
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Home
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PMM-Lab starts with warnings in console
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PredictorView create warnings on Time-Extrapolation to "early"
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Perfect! Thanks.
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Tertiary Model Selection - calculation of model quality measures fails often
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Model Editor Node Execution
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XLS Model Reader: Allow to specify categories and units for polynoms
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Model name automatically created
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PredictorView create warnings on Time-Extrapolation to "early"
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PredictorView create warnings on Time-Extrapolation to "early"
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XLS Model Reader: Allow to specify categories and units for polynoms
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