Michele Ferrandino

Ok, Thanks Nick. I have never used antsMultivariateTemplateConstruction.sh. I will try it! Best, Miki

Hi, thank you for your answer. I have already used ANTs for DTI maps. I need only to coregister the DTI maps, such as FA, which has values between 0 and 1. I have never had any problem. Additionally, there is a good paper about DTI normalization with ANTs (Improved DTI registration allows voxel-based analysis that outperforms tract-based spatial statistics; PMID: 24650605). I do not need to normalize to a standard space the DWI acquisition or the DTI tensor. Only maps. However, my question was related...

Hello, My name is Michele and this is the first time that I ask help in this forum. My goal is to normalize the DTI maps to a standard space (IIT space) by ANTs. I have already used ANTs, but this time, I would like to create a group template by using the brain extracted B0 from each subject: I used: buildtemplateparallel.sh -d 3 -o template -c 0 -r 1 -n 0 -i 3 *.nii.gz At the end I had the template (templatetemplate.nii.gz) and the different warp and affine files for each subject (e.g: template_ID_nodif_brainWarp.nii.gz...