Magdalena Ponce de León

Hi, I'm trying to normalise a nifti file to a template. I used antsRegistrationSyN.sh, so I have a warped image that works well. After that, I use antsApplyTransforms with the files obtained in the last step but the final image doesn't look nice. Shouldn't be the same? Here are the command calls: ./antsRegistrationSyN.sh -f template_FDG.nii.gz -m FDG.nii.gz -o SyN_FDG.nii.gz antsApplyTransforms -d 3 -i FDG.nii.gz -o t_SyN_FDG.nii.gz -r template_FDG.nii.gz -t SyN_FDG.nii.gz1Warp.nii.gz -t [SyN_FD...