Bo Li

Hi Ying, You probably need to look at the distribution of BAF markers. There should...

Extract LRR and BAF signals from next generation sequencing data

Hi, The first 3 lines of the VCF are like this: CHROM POS ID REF ALT QUAL FILTER...

Hi, by default, CHAT accommodates the format used in TCGA: https://tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm....

CHAT

Hi Tong, The NA in these fields indicate that the CHAT cannot estimate information...

You are right -- sex chromosomes are currently not included in my analysis. Glad...

I am not sure at this point where could go wrong. May I take a look at your SNP data...