User Activity

  • Posted a comment on discussion General Discussion on Lep-MAP3

    Dear both, I think you can analyse such data as F2 by setting P1-P4 to grandparents, adding dummy parents and then F7 as offspring. Cheers, Pasi

  • Modified a wiki page on Lep-Anchor

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  • Modified a wiki page on Lep-Anchor

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  • Modified a comment on discussion General Discussion on Lep-MAP3

    Dear Nick, There should be documentation in the wiki now about linkage mapping without parents. Please ask if it is not clear. However, it might be possible that your data can be analysed without any of these tricks. Just analyse the data as known parents, the sex averaged map will work anyway... Cheers, Pasi

  • Posted a comment on discussion General Discussion on Lep-MAP3

    There should be documentation in the wiki now. Please ask if it is not clear. Cheers, Pasi

  • Modified a wiki page on Lep-MAP3

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  • Posted a comment on discussion General Discussion on Lep-MAP3

    Dear Farid, Sorry, I don't know any software to do this. For best results, I would run SeparateChromosomes2 on all markers, and only then would do the thinning of markers in the linkage groups so that the markers selected will be contributing to the map. Probably good result would be obtained by thinning markers after ParentCall2 or Filtering2 on all markers. Cheers, Pasi

  • Modified a wiki page on Lep-MAP3

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Personal Data

Username:
lep-map
Joined:
2013-05-14 10:33:39

Projects

This is a list of open source software projects that Pasi Rastas is associated with:

  • Lep-Anchor Linkage map guided genome anchoring Last Updated:
  • Lep-MAP fast and accurate linkage map construction for large SNP datasets Last Updated:
  • Lep-MAP2 Linkage map construction suite Last Updated:
  • Lep-MAP3   Last Updated:

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