Dear both, I think you can analyse such data as F2 by setting P1-P4 to grandparents, adding dummy parents and then F7 as offspring. Cheers, Pasi
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Dear Nick, There should be documentation in the wiki now about linkage mapping without parents. Please ask if it is not clear. However, it might be possible that your data can be analysed without any of these tricks. Just analyse the data as known parents, the sex averaged map will work anyway... Cheers, Pasi
There should be documentation in the wiki now. Please ask if it is not clear. Cheers, Pasi
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Dear Farid, Sorry, I don't know any software to do this. For best results, I would run SeparateChromosomes2 on all markers, and only then would do the thinning of markers in the linkage groups so that the markers selected will be contributing to the map. Probably good result would be obtained by thinning markers after ParentCall2 or Filtering2 on all markers. Cheers, Pasi
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