Pasi Rastas

To add, in Filtering2, heterozygoteRate should be set to some small value (like 0.01). Cheers, Pasi

Dear Xochitl Granados, Thank you for your question. I think this would be easiest to analyse as F1. Changing population (diploid) genotypes as 0/0 => 0/0 and 1/1=>0/1 and keeping mother as such. However, this requires quite much scripting to re-format the data, depending on which format your data is (for example, population variants could be called haploid). Maybe ParentCall2 could support this in the future. Without reformatting the (diploid called) population data, it can be analysed with two dummy...

Thanks Hongbo, for pointing the missing file. The file is now added. Cheers, Pasi

Please read the part about selfing crosses on the wiki as well. Cheers, Pasi

java locale fix

Dear both, I think you can analyse such data as F2 by setting P1-P4 to grandparents, adding dummy parents and then F7 as offspring. Cheers, Pasi

Home

Home