Hi Jxcui! Thank you very much for the feedback! Yes... it seems not a very tested pipeline anyway...
No, I didn't solve it, sorry!
No, I didn't. Sorry!
As you can clearly see in the logs that I uploaded, -r hg19 was specified, but MOCAT crashed miserabily: EXECUTE COMMAND : -sf /scratch/MOCAT/MOCAT.samples -cfg /scratch/MOCAT/logs/tmp//user.MOCAT.samples.20170808_224339.assemble_revise_predict_genes_with_hg19_screen/MOCAT.cfg -a -r hg19
hg19 DB not recognised in the assembly stage
First of all, I would like to congratulate the LLNL Bioinformatics team for LMAT....