Activity for jzheng
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jzheng posted a comment on ticket #794
Hi Rob, We discussed the tracker on 2017-02-20 OBI dev call. James will add the terms....
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Hi Rob, We will discuss the trackers (794, and 823) you submitted on OBI dev call...
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Edit 'cell specimen' and add 'single cell speci...
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Comments from Bjoern: The grain/part/component stuff is a mess. The grain/part/component...
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handle single cell specimen
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has part is a transitive property cannot be used to set cardinality constraint. Need...
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handle single cell specimen
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Discussed on obi call Jan 23, 2017 Will edit cell specimen and add single cell specimen...
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handle single cell specimen
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Discussed on 2016-10-24 OBI call. Not so clear how to improve it. It needs further...
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Discussed on 2016-10-24 OBI call. We don't require that quality always associate...
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qualities without matching processes
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manufacturing defined class
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Discussed on 2016-10-24 OBI call. There is no issue anymore. Now device is associate...
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Discussed on 2016-10-24 OBI call. The issued addressed in assay harmonization discussion...
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grouping processes - assays vs process - granularity issue
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Discussed on 2016-10-24 OBI call. We renamed specimen creation to specimen collection...
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specimen creation
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Discussed on 2016-10-24 OBI call. We agreed with the comments on the term 'waiting'....
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Discussed on 2016-10-24 OBI call. The issue is not relevant any more.
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Cellular_component
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Should scattered_molecular_aggregate be a defined class?
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Discussed on 2016-10-24 OBI call. No driving use cases so far. Nothing inferred under...
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Ontobee developer Edison has re-uploaded the UBERON ontology. There is no individual...
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prostate gland imported as both class and instance
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Class request: digital object identifier
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Term is added with ID: OBI_0002210. See SVN revision 4073.
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Change was made. See SVN revision 4073
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reagrading PubMed ID
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add new term DOI (ticket: 818) and edit PubMed ...
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Discussed on Aug 22, 2016 OBI dev call. We will change it to denotes only extactly...
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NTR: terms related to RNA seq data analysis
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Class request: digital object identifier
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Discussed on Aug 22, 2016 OBI dev call. Definition: A digital object identifier (DOI)...
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Discussed on Aug 22, 2016 OBI dev call. We will change it to denotes only extact...
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reagrading PubMed ID
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As what I understand, it is correct.
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This was discussed on the group call on 7/18. 1) 'has_specified_input' use Decision...
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Issues with inputs of following two assays: http://purl.obolibrary.org/obo/OBI_0001001...
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assay harmonization - processs in assays
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assay harmonization - objective
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assay harmonization - outputs of assay
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assay harmonization - device
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assay harmonization - device
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assay harmonization - inputs of assay
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improve definition of "Non negative matrix factorization"
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We can collect blood from people used for transfusion. In this case, I don't think...
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issue of OBI_1110095: 'blood harvesting'
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coordinate assays and observing processes with BCO
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issue solved on OBI dev call 2016-06-06
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Discussed on 2016-04-25 OBI call, the terms in DRON ontology scope.
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change drug def and add a defined term 'approved drug''
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Discussed on OBI call 2016-4-25. Will collect all IDO related OBI terms and discuss...
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It is not necessary that sibling classes are disjoint with each other. So, it is...
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speciment creation objective
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move high resolution Figure 1 and 4 files from ...
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high resolution Figure 1
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The discussion of assay harmonization also discussed analyte role: https://docs....
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Redrew Figure 4 using Cmap Tool and made a high...
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Polyacrylamide gel
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Discussed on Feb 8, 2016 call. The definition and logic axioms of Ployacrylamide...
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Discussed on Feb 7, 2016 call Move Chimera as a subClassOf organism
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Chimera
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Population
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Discusse on Feb 8, 2016 call We will import PCO population, see tracker: https:/...
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Datatype property restriction to float is causing loss of significant digits on lat/lon measurements
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Modified IAO, changed 'has measurement value' range from float to double
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Submitted issue tracker to IDO: https://github.com/lgcowell/infectious-disease-o...
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Datatype property restriction to float is causing loss of significant digits on lat/lon measurements
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Add high resolution Figure 1 and Figure 4
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I think specimen families can only be generated through 'material processing'. The...
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The output of a specimen collection process is specimen. During this process some...
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replace Figure 4.tiff by Figure 4.png with high...
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Figure 4
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Correct setting of 'has curation status' annota...
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Following terms were added into OBI by Chris on Nov 17, 2015 collection of specimens...
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send iPSC term request to CLO: https://github.com/CLO-ontology/CLO/issues/24
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relabel OBI:infection
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I am proposing alternative primary labels to make them more expressive over set /...
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Based on the discussion in OBI dev call on 10/26/2015. Here are the terms for adding...
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Comments from Bjoern. Add 'specimen set collection process', a subClassOf 'specimen...
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Based on the discussion in OBI dev call on 10/26/2015. Here are the terms for adding...
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Comments from Bjoern. Add 'specimen set collection process', a subClassOf 'specimen...
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Sagar, Thanks for your comments. That information will be put in the 'example of...
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For logical axiom, how about: 'material entity' has_role some ('reagent role' and...
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Shall we specify: cell reprogramming has_specified_input some 'somatic cell' http://purl.obolibrary.org/obo/CL_0002371...
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Should the logical definition is: 'CRID symbol' denotes only 'cell culture' Besides,...
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Changes were made based on discussion. Commits: SVN revision 4004.
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link an OBI term to an ENVO term
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OBI_0600012
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link an OBI term to an ENVO term
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new terms request for Biobank data annotation
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Discussed on 9/21/2015 OBI call. The term 'outlier' has been added in other OBO Foundry...
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outlier_role
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Discussed on 9/21/2015. Chris will follow up with Ryan again. If no response, we...
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Discussed on OBI call 9/21/2015. We definitely want to have experimental stimulation...
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modeling data item
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Concretizes Relations
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relations have been added in BFO and RO.
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Done
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