#787 relabel OBI:infection

[jzheng]

Both OBI and IDO has 'infection'
http://www.ontobee.org/ontology/OBI?iri=http://purl.obolibrary.org/obo/OBI_1110021
http://www.ontobee.org/ontology/IDO?iri=http://purl.obolibrary.org/obo/IDO_0000586

OBI infection is a biological process but IDO infection is a material entity. So proposed to relabel OBI infection to infection process and need link to IDO infection when we import the term.

Discussed on 11/16/2015 OBI dev call:
agree to relabel OBI infection to infection process and use infection as alternative term
after import IDO infection, will add logical axiom, OBI: infection process has output some IDO:infection

[Alan Ruttenberg]

IDO has infectious disease course, which is the process. Might want to check with Lindsay

[Alan Ruttenberg]

Also, http://purl.obolibrary.org/obo/OBI_1110093 looks like http://purl.obolibrary.org/obo/IDO_0000452

[Chris Stoeckert]

Of course I saw this AFTER I made the changes and commit. Will keep open then until we sort out the process.

[Alan Ruttenberg]

Thanks for leaving this open and sorry for the late comment. I sent email to Lindsay and will follow up either having her comment here or me relaying her assessments here.

[jzheng]

Submitted issue tracker to IDO:
https://github.com/lgcowell/infectious-disease-ontology/issues/44

[bjoernpeters]

Schedule call with Lindsay. Earliest 2 months from now. Have list of overlapping terms compiled by then. Work also with DO.

[Sivaram Arabandi]

OBI: infection process has output some IDO:infection

will this axiom cover the situation that the 'infection process' and the 'existence of the infection (material entity)' overlap both temporally and spatially?