Heidi Jacobs

Is there a way to control for confouding variables in the robust correlations (partial correlations)? Thanks!

Yes! I followed that by creating a mask and then running the registration with -x option (I did not do the Syn, as it is within a subject, different modality), so I did translate, rigid and affine. Any suggestions? It seems to be putting the slab too high (superior) in the brain

Yes! I followed that by creating a mask and then running the registration with -x option (I did not do the Syn, as it is within a subject, different modality), so I did translate, rigid and affine.

Hi, I have acquired a whole brain T1 and a slab focused on a specific region in the brain. One the MNI template we have drawn a ROI that we also want to overlay on the slab. So, I want to get these MNI-ROIs in the slab space. What I have been doing is: 1. Register the MNI to whole-brain T1 antsRegistrationSyN.sh -d 3 -o MNItoCST_YNG007 -f CST_YNG007_T1.nii.gz -m ../MNI152_T1_0.5mm.nii.gz -t s -s 26 warp the MNI ROI to the T1-space antsApplyTransforms -d 3 -i ../ROI.nii.gz -o CST_YNG007_oi.nii.gz...

Thanks! I will give it a try!

Recently, I came across a manuscript that averaged two anatomical MRI scans to a "mid-point" by using registration of ANTs (symmetric diffeomorphic registration of serial MRI) [see :https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315058/]. This is crucial in aging research and I am looking for a way to average two time points of anatomy of older individuals ( 6 years apart) to register that to resting-state. Are they referring to the antsRegistrationSyn.sh script? Would these options be ok: /Users/me/UNIX/antsRegistrationSyN.sh...

Thanks I will give it a go. The error message I got (for -t s) was: Exception caught:...

Hi, I am a newbie and not a real computer geek, but I am trying :) I have a template...