Thomas DeRamus

It looks great! Just needs to be shifted a bit. Thanks so much!

It ran to completion and the initial template looks great! If the whole job runs to completion I'll go ahead and close the issue.

Got it. Yeah it looks like the jobs may be iterating because it's queueing more jobs with different tags. I'm probably just impatient. 463821 qTRD bash tderamus R 1:45:36 1 trendscn010.rs.gsu.edu 463836 qTRD antsdef3 tderamus R 0:02 1 trendscn008.rs.gsu.edu 463837 qTRD antsdef3 tderamus R 0:02 1 trendscn007.rs.gsu.edu 463838 qTRD antsdef3 tderamus R 0:02 1 trendscn007.rs.gsu.edu 463835 qTRD antsdef3 tderamus R 0:22 1 trendscn008.rs.gsu.edu

Well I say that but it pops back in the queue every so often. 463832 qTRD antsdef2 tderamus R 0:20 1 trendscn008.rs.gsu.edu 463833 qTRD antsdef2 tderamus R 0:20 1 trendscn004.rs.gsu.edu 463834 qTRD antsdef2 tderamus R 0:20 1 trendscn004.rs.gsu.edu 463831 qTRD antsdef2 tderamus R 0:22 1 trendscn008.rs.gsu.edu

It does not. Thankfully that issue seems to be resolved with the right --partition flag, but it seems to hang up once the jobs have been run. I know the output says PENDING, but it's been done for quite a while. No longer see it in the squeue. antsMultivariateTemplateConstruction2.sh -d 3 -i 4 -k 1 -t SyN -m CC -c 5 -o /data/mialab/users/tderamus/Data_Fu^Con_DevCog/derivatives/Template_Maker/DevTemplate $zorkus (reverse-i-search)`sba': ^Catch TemplateMaker.job [tderamus@trendscn010 Template_Maker]$...

Oh. So just edit the script directly?

Did so. Same issue. Works just fine with serial but have quite a few images I need to do this with...... antsMultivariateTemplateConstruction2.sh -d 3 -i 4 -k 1 -t SyN -m CC -c 5 -o /data/mialab/users/tderamus/Data_Fusion_DevCog/derivatives/Template_Maker/DevTemplate $zorkus Creating template /data/mialab/users/tderamus/Data_Fusion_DevCog/derivatives/Template_Maker/DevTemplatetemplate0.nii.gz from a population average image from the inputs. /data/mialab/users/tderamus/Data_Fusion_DevCog/derivatives/Template_Maker/First_sub-M68228769_Session1_task-restclosed_bold.nii.gz...

Forgot to attach these.