Activity for Jeffrey Hoover
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Jeffrey Hoover created ticket #10
many changes to allow exons to span origin in circular genomes
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see JCVI development directory for code fix
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improved handling of wraparound coordinates on circular genomes
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now allows exon to span the origin handling extended to remaining reports: .aln,...
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The presentation should give you a feel for the design philosophy and basic algorithm...
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Revised handling of non-canonical splicing to be consistent with database documentation.
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-G option doesn't work and should be deprecated, missing symbolic link for external program cd-hit
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Spike Protein Fusion Peptide and Feline Coronavirus Virulence http://wwwnc.cdc.g...
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VIGOR, an annotation program for small viral genomes http://www.biomedcentral.co...
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Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype,...
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also need to insert this code: # format and return exons my @tmp = shift @exons;...
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recommended hack to deal with mis-annotated references where ribosomal slippage significantly misplaced
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bug in subsequence subroutine (VIGOR3.pm)
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implement reference tag min_functional_length=nnn
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find_missing_pieces not filling in exons of spliced genes
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stats summary miscounting genes
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The code in the development directory contains a fix: if ( defined $start2 ) { print...
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The code in the development directory contains a fix. if ( defined $start2 ) { print...
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formatting error in TBL file when gene spans the origin of a circular genome
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