Hossein Hajiabadi

Thank you Ismael! So, I should select an atom or a triad of atoms in the same membrane depth. Also, the plane of the triad of atoms must be parallel to the main plane of the membrane. Am I getting this right?

Hello everyone! APL analysis needs renames and a selection of atoms from each resname for each lipid type. But I'm not sure how to choose atoms for each lipid type. Apparently, it can be a single atom or a triad of atoms, but what atoms should I select for each lipid type? What are the circumstances for selecting atoms? How much does selecting atoms affect the final results? I really appreciate any help you can provide.