Vincent Greffe

Dear Prof. Hall, I would love to try out kSNP, it looks very promising. However I'm experiencing some problems running it. I'm running the most basic setting of kSNP v3 (no annotations) for 42 microbial strains (fasta files containing multiple contigs) however it goes very slowly. It has been counting k-mers with Jellyfish for 3 days now. The fsplit files are present in the output folder, but in the terminal it says that it only made fsplit0,1 and 10. Is it normal that the program takes this much...