finesim

Created a git repo with the helper scripts.

Ok, I have created a conda env and an installation script, which installs the dependencies in a given local directory, which I am using in a Snakemake workflow. After polishing it a bit, I will share it.

I tried to find the deps in conda channels and the problem probably are SignalP and TMHMM name: MetaErg channels: - bioconda - biobuilds dependencies: - perl-archive-extract - perl-dbi - perl-html-parser - perl-list-moreutils - perl-swiss-knife # Only in Biobuilds https://github.com/biobuilds/biobuilds/blob/master/perl-swiss-knife/1.73/meta.yaml # - perl-threads-shared # Not in any channels yet - perl-xml-parser - perl-xml-simple - perl-bioperl - aragorn - diamond - hmmer - minced - prodigal # -...

I tried to find the deps in conda channels and the problem probably are SignalP and TMHMM name: MetaErg channels: - bioconda - biobuilds dependencies: - perl-archive-extract - perl-dbi - perl-html-parser - perl-list-moreutils - perl-swiss-knife # Only in Biobuilds https://github.com/biobuilds/biobuilds/blob/master/perl-swiss-knife/1.73/meta.yaml # - perl-threads-shared # Not in any channels yet - perl-xml-parser - perl-xml-sample - perl-bioperl - aragorn - diamond - hmmer - minced - prodigal # -...

Hey, I would love to be able to install and use MetaErg via Bioconda, may I publish a recipe to Bioconda or provide you with one?