First of all let me recommend that you dont use them (as they have not been updated since 2004, you'd be much better of with newer optimization tools, such as COPASI: http://copasi.org). That being said, If you really wanted to use them, you'd require: - a windows machine (or a virtual machine running windows(preferably 32bit)) - first install the SBW framework (as available here: https://sourceforge.net/projects/sbw/files/sbw/) note i do not know which version will work with the SBW optimizers....
- properly update version
Installation in MATLAB
thanks for letting us know, i've applied the fix to the git repo, so it will be part of the next release.
Hello Joel, to clarify, that we know exactly which steps you took: you downloaded this archive: https://sourceforge.net/projects/sbml/files/libsbml/5.19.0/stable/MATLAB%20interface/libSBML-5.19.0-matlab-binaries.zip/download extracted it, and added the folder into your matlab path? then changing into the folder and calling TranslateSBML('test.xml') gave you which error message? Could we see the complete log? the archive contains the binaries for windows (64bit / 32bit), linux (64bit / 32bit) and...
Sorry for the inconvenience, we have not yet made a new version of the validator available, so the forwarding problem from before remains. Your registration did go through and i will send you the API key to your registered email address.
I can change the 1.2 name to 'Systems Biology Simulation Core Library (SBSCL)' (you or whoever created the entry should also be possible to edit / remove it). If you give me the go ahead i will.
Hello Andreas, I'm not sure how likely it is to change the display at this point. The results should have been grouped, if the names of the simulators are the same (in that case only the latest version would appear in the list). Since here the names differ, that would be an issue. you could just let me know which entries you'd like to have removed. Also please drop me a mail, when you want the new results to go public. cheers Frank