In this version you can treat them as different libraries, i.e. make two lib_seq entries for each file and give different library names, but assign the same setID of 1 so that they're used together for scaffolding. You can enter the same insert size/sdev for both - the pipeline will recalculate it later anyway, so these are treated as just fallback estimates. In the next release all this will be handled automatically. Hope this helps.
Hi Si, This sounds like a compiler version issue. What version of gcc are you running?...