Activity for Debby Siegele
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Debby Siegele committed [r524]
added term for mixotrophic phenotype
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bacteriocin and bacteriophage sensitivity pheno...
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added 'altered phenotype' as parent of altered ...
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edited terms for altered drug-dependence of pop...
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added definitions to drug-dependent growth phen...
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corrected namespace for OMP:0007223
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edited drug-dependent growth terms
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changed erythromycin dependent growth to macrol...
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moved terms from organismal growth phenotype to...
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create a high-level branch 'microbial growth phenotype'
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create a high-level branch 'microbial growth phenotype'
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create a high-level branch 'microbial growth phenotype'
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create a high-level branch 'microbial growth phenotype'
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Organization of growth and reproduction terms in OMP
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added host coloization phenotype and viability ...
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moved bacteriocin resistance phenotype terms
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fixed curly quote error in OMP:0007241
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fixed error in OMP:0007241
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changed curved quote to regular quote
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added date to name of test_dir1 to reduce chanc...
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put correct files into directory 2015-07-15
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had put wrong files into LATEST directory, dele...
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added child terms to chemical sensitivity pheno...
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deleted extra copy of test_dir1
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moved copy of latest release into LATEST directory
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moved releases directory out of trunk, created ...
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deleted tags directory
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edited host-virus interaction terms
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terms to describe sensitivity/resistance to bacteriophage
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terms to describe sensitivity/resistance to bacteriophage
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terms to describe sensitivity/resistance to bacteriophage
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added 'altered phenotype' as parent of 'altered...
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terms to describe sensitivity/resistance to bacteriophage
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terms to describe sensitivity/resistance to bacteriophage
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How FYPO handles viability. FYPO:0000049 ! inviable cell synonyms: essential, lethal...
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Suggested parent term OMP:0000174 growth phenotype New Child term: cell viability...
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increased swim ring diameter
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Don't make the requested term because 'increased swim ring diameter' is evidence...
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reviewed existing cross-products (logical defin...
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fixed the remaining non-fatal warnings
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added bacteriophage sensitivity terms; fixed so...
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fixed logical definition for cell motility phen...
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added missing terms under asexual reproduction ...
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phenotype terms for endospores and sporulation
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The following terms were added to the ontology: OMP:0008180 ! interrupted endospore...
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commit new release files in test_dir1
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created test_dir1
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updated releases
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added new directories
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OMP_release_2015-06-12
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reviewed terms that TCK and KDA made
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edited endospore terms
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worked on endospore morphology terms
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drafts: parent: altered viability phenotype Def. A microbial phenotype that describes...
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added spore shape phenotypes
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drafts: parent: altered viability phenotype Def. A microbial phenotype that describes...
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fixed typos, deleted phenotype from some term n...
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phenotype terms for endospores and sporulation
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test commit, no changes
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added definitions to two altered phosphorus uti...
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Suvi, I discovered another term in the ontology OMP:0000192 chemical production phenotype...
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moved 'gas production test' to the node 'differ...
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Suggested revision of definition for OMP:0000252 A metabolic phenotype that deals...
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Suvi and Debby discussed this on 4/2/2015 and decided that the existing term will...
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increased number of cells at the 2-cell stage
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increased rate of mutation
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increased rate of mutation
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I think this is an example of a cell division phenotype that would be annotated with...
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increased rate of mutation
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nucleotide excision repair phenotype
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Will, Jonathan, Jim, and I discussed whether to add this term to the ontology and...
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The following terms have been added to the ontology. I think this ticket can be changed...
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increased rate of spontaneous mutation
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These terms were added to the ontology as children of the 'genetic material phenotype'...
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Why do some 'altered X' terms contain the word phenotype and some don't?
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Why do some 'altered X' terms contain the word phenotype and some don't?
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corrected term that shouldn't have had 'phenoty...
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added terms for rifamycin resistance phenotypes
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Antibiotic subclass - rifamycins
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DAS made terms for rifamycin resistance phenotype. See OMP:0007215-OMP:0007221. Still...
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This ticket was labeled won't-fix because it is a duplicate of ticket #58.
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Antibiotic subclass - rifamycins
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Antibiotic subclass - rifamycins
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Specific Antibiotic resistance term-mecillinm
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We made the decision to not have terms for individual antibiotics. Instead, we will...
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