Don Cameron

Hi, I'm trying to run the scalpel-discovery --somatic analysis, however the process does not seem to complete. I submit the following shell to our server with %qsub -l h_vmem=40g shell.sh ~/Programs/scalpel-0.5.3/scalpel-discovery --somatic --normal ~/Projects/Scalpel/scalpel_01vehicle_sort_markdup.bam --tumor ~/Projects/Scalpel/scalpel_11combo_sort_markdup.bam --bed ~/Projects/Scalpel/mm10_codingexons.bed --ref ~/Projects/Scalpel/mm10.fa --numprocs 10 --two-pass The output is as follows: Local date...