athanell

Hi Nick, how can someone implement the approach that you mentioned for creating a CT template using a skull binary mask and a skull distance map? Can I use: antsMultivariateTemplateConstruction.sh -d 3 -k 2 -m 100x70x50x10 -t GR -s CC -c 0 -o TMPL CT_*.nii.gz where my data is CT_01.nii.gz, CT_01_SkullMask.nii.gz, CT_01_SkullDistMap.nii.gz, CT_02.nii.gz,... It was mentioned in https://sourceforge.net/p/advants/discussion/840260/thread/9d513ebe/?limit=25#84b7 that before bulding the template the CTs...

Hi Nick, how can someone implement the approach that you mentioned for creating a CT template using a skull binary mask and a skull distance map? Can I use: antsMultivariateTemplateConstruction.sh -d 3 -k 2 -m 100x70x50x10 -t GR -s CC -c 0 -o TMPL CT_*.nii.gz where my data is CT_01.nii.gz, CT_01_SkullMask.nii.gz, CT_01_SkullDistMap.nii.gz, CT_02.nii.gz,... It was mentioned in https://sourceforge.net/p/advants/discussion/840260/thread/9d513ebe/?limit=25#84b7 that before bulding the template the CTs...

Hi Nick, how can someone implement the approach that you mentioned for creating a CT template using a skull binary mask and a skull distance map? Can I use: antsMultivariateTemplateConstruction.sh -d 3 -k 2 -m 100x70x50x10 -t GR -s CC -c 0 -o TMPL CT_*.nii.gz where my data is CT_01.nii.gz, CT_01_SkullMask.nii.gz, CT_01_SkullDistMap.nii.gz, CT_02.nii.gz,... It was mentioned in https://sourceforge.net/p/advants/discussion/840260/thread/9d513ebe/?limit=25#84b7 that before bulding the template the CTs...

Hi Nick, how can someone implement the approach that you mentioned for creating a CT template using a skull binary mask and a skull distance map? Can I use: antsMultivariateTemplateConstruction.sh -d 3 -k 2 -m 100x70x50x10 -t GR -s CC -c 0 -o TMPL CT_*.nii.gz where my data is CT_01.nii.gz, CT_01_SkullMask.nii.gz, CT_01_SkullDistMap.nii.gz, CT_02.nii.gz,... It was mentioned in https://sourceforge.net/p/advants/discussion/840260/thread/9d513ebe/?limit=25#84b7 that before bulding the template the CTs...

Hi Nick, how can someone implement the approach that you mentioned for creating a CT template using a skull binary mask and a skull distance map? Is it correct to use: antsMultivariateTemplateConstruction.sh -d 3 -k 2 -m 100x70x50x10 -t GR -s CC -c 0 -o TMPL CT_*.nii.gz where my data is CT_01.nii.gz, CT_01_SkullMask.nii.gz, CT_01_SkullDistMap.nii.gz, CT_02.nii.gz,... It was mentioned in https://sourceforge.net/p/advants/discussion/840260/thread/9d513ebe/?limit=25#84b7 that before bulding the template...

Hello, I have both CT and MRI images of subjects. I can extract the CT skull and register it on the T1 (t1_SkullMask). I was wondering if there is a way to assist the antsbrainextraction using the CT skull information (t1_SkullMask). Like providing an extra template (t1_SkullMask) and a probability mask (t1_SkullPrior <- t1_SkullMaskSmoothed ) for the skull? i.e antsBrainExtraction.sh -d 3 -a t1.nii.gz -e HeadTemplate.nii.gz -m BrainPrior.nii.gz -e t1_SkullMask.nii.gz -m2 t1_skullPrior.nii.gz -o...

Hello, I have both CT and MRI images of subjects. I can extract the CT skull and register it on the T1 (t1_SkullMask). I was wondering if there is a way to assist the antsbrainextraction using the CT skull information (t1_SkullMask). Like providing an extra template and probability mask for the skull? i.e antsBrainExtraction.sh -d 3 -a t1.nii.gz -e HeadTemplate.nii.gz -m BrainPrior.nii.gz -e t1_SkullMask.nii.gz -m2 t1_skullPrior.nii.gz -o output Thank you

Hello, I have both CT and MRI images of subjects. I can extract the CT skull and register it on the T1 (t1_SkullMask). I was wondering if there is a way to assist the antsbrainextraction using the CT skull information. Like providing an extra template and probability mask for the skull? i.e antsBrainExtraction.sh -d 3 -a t1.nii.gz -e HeadTemplate.nii.gz -m BrainPrior.nii.gz -e t1_SkullMask.nii.gz -m2 t1_skullPrior.nii.gz -o output Thank you