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About NetworkX
NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. Generators for classic graphs, random graphs, and synthetic networks. Additional benefits from Python include fast prototyping, easy to teach, and multi-platform. Network structure and analysis measures.
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h5py
The h5py package is a Pythonic interface to the HDF5 binary data format. It lets you store huge amounts of numerical data, and easily manipulate that data from NumPy. For example, you can slice into multi-terabyte datasets stored on disk, as if they were real NumPy arrays. Thousands of datasets can be stored in a single file, categorized and tagged however you want. H5py uses straightforward NumPy and Python metaphors, like dictionary and NumPy array syntax. For example, you can iterate over datasets in a file, or check out the .shape or .dtype attributes of datasets. You don't need to know anything special about HDF5 to get started. In addition to the easy-to-use high level interface, h5py rests on a object-oriented Cython wrapping of the HDF5 C API. Almost anything you can do from C in HDF5, you can do from h5py.
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CVXOPT
CVXOPT is a free software package for convex optimization based on the Python programming language. It can be used with the interactive Python interpreter, on the command line by executing Python scripts, or integrated in other software via Python extension modules. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Python’s extensive standard library and on the strengths of Python as a high-level programming language. Efficient Python classes for dense and sparse matrices (real and complex), with Python indexing and slicing and overloaded operations for matrix arithmetic. Interfaces to the linear programming solver in GLPK, the semidefinite programming solver in DSDP5, and the linear, quadratic and second-order cone programming solvers in MOSEK.
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PyQtGraph
PyQtGraph is a pure-python graphics and GUI library built on PyQt/PySide and NumPy. It is intended for use in mathematics/scientific/engineering applications. Despite being written entirely in python, the library is very fast due to its heavy leverage of NumPy for number crunching and Qt's GraphicsView framework for fast display. PyQtGraph is distributed under the MIT open-source license. Basic 2D plotting in interactive view boxes. Line and scatter plots. Data can be panned/scaled by mouse. Fast drawing for real-time data display and interaction. Displays most data types (int or float; any bit depth; RGB, RGBA, or luminance). Functions for slicing multidimensional images at arbitrary angles (great for MRI data). Rapid update for video display or real-time interaction. Image display with interactive lookup tables and level control. Mesh rendering with isosurface generation. Interactive viewports rotate/zoom with mouse. Basic 3D scenegraph for easier programming.
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Scapy
Scapy is a powerful interactive packet manipulation program. It is able to forge or decode packets of a wide number of protocols, send them on the wire, capture them, match requests and replies, and much more. It can easily handle most classical tasks like scanning, tracerouting, probing, unit tests, attacks, or network discovery (it can replace hping, 85% of nmap, arpspoof, arp-sk, arping, tcpdump, tshark, p0f, etc.). It also performs very well at a lot of other specific tasks that most other tools can’t handle, like sending invalid frames, injecting your own 802.11 frames, combining technics (VLAN hopping+ARP cache poisoning, VOIP decoding on WEP encrypted channel), etc. Scapy runs natively on Linux, Windows, OSX, and on most Unixes with libpcap. The same code base now runs natively on both Python 2 and Python 3. Scapy development uses the Git version control system. Scapy reference repository is hosted on GitHub.
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NetworkX
networkx.org
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