LigPlot+

LigPlot+

EMBL-EBI
+
+

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About

LigPlot+ is a successor to our original LIGPLOT program for the automatic generation of 2D ligand-protein interaction diagrams. It is run from an intuitive java interface that allows on-screen editing of the plots via mouse click-and-drag operations. In addition to the new interface, the program includes several major enhancements over the old version. When two or more ligand-protein complexes are sufficiently similar, LigPlot+ can automatically display their interaction diagrams either superposed or side by side. Any conserved interactions are highlighted. The LigPlot+ suite also now includes an update of the original DIMPLOT program for plotting protein-protein or domain-domain interactions. Users can flexibly select the interface of interest and DIMPLOT will then generate a diagram showing the residue-residue interactions across the interface. To assist in interpretation, the residues in one of the interfaces can be optionally displayed in sequence order.

About

Nanome is a collaborative platform for molecular visualization and drug discovery. Teams load protein and small-molecule structures and review them together in 3D, in a web browser or in an XR headset (Meta Quest 3 and 3S, Apple Vision Pro, Samsung Galaxy XR). Everyone in a session sees the same structure at the same time, so a chemist in a headset and a colleague on a laptop can point at the same pocket from different cities. MARA, the AI copilot built into Nanome, runs docking, co-folding, electrostatics and ADMET estimates from plain-English requests, drawing on 300+ integrated scientific tools, and returns structures you can inspect in 3D. Nanome opens PDB, mmCIF, SDF, MOL2, PyMOL and Maestro files and connects to Schrodinger LiveDesign, OpenEye, Cresset Flare, CDD Vault, KNIME and Jupyter. Enterprise deployments run single-tenant or on-premises. Free web seat; 14-day full trial, no credit card.

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported

Platforms Supported

Windows Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported

Audience

Labs and researchers interested in a solution to create and visualize ligand-protein interaction diagrams

Audience

Medicinal chemists, computational chemists, structural biologists, and educators in pharma, biotech, and academia

Support

Phone Support Supported
24/7 Live Support Not Supported
Online Supported

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported

API

Offers API Not Supported

API

Offers API Not Supported

Screenshots and Videos

Screenshots and Videos

No images available

Pricing

No information available.
Free Version Not Supported
Free Trial Not Supported

Pricing

$20.83/month/user (academic)
Free Version Supported
Free Trial Supported

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Review this Software

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation Supported
Webinars Supported
Live Online Not Supported
In Person Supported

Training

Documentation Supported
Webinars Supported
Live Online Supported
In Person Not Supported

Company Information

EMBL-EBI
United Kingdom
www.ebi.ac.uk/thornton-srv/software/LigPlus/

Company Information

Nanome
Founded: 2015
United States
nanome.ai

Alternatives

SILCS

SILCS

SilcsBio

Alternatives

No Alternatives
3decision

3decision

Discngine
Aurora Drug Discovery

Aurora Drug Discovery

Aurora Fine Chemicals

Categories

Drug Discovery Supported

Categories

Drug Discovery Supported
Molecular Modeling Supported

Integrations

No info available.

Integrations

No info available.
Claim LigPlot+ and update features and information
Claim LigPlot+ and update features and information
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Claim Nanome and update features and information