Platforma

Platforma

MiLaboratories
+
+

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About

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data. Its scope is now expanding to include somatic short variant calling and to tackle copy number (CNV) and structural variation (SV). In addition to the variant callers themselves, the GATK also includes many utilities to perform related tasks such as processing and quality control of high-throughput sequencing data and bundles the popular Picard toolkit. These tools were primarily designed to process exomes and whole genomes generated with Illumina sequencing technology, but they can be adapted to handle a variety of other technologies and experimental designs.

About

Platforma is a no-code bioinformatics software that converts raw next-generation sequencing (NGS) data into insights. It offers a user-friendly interface with modular, no-code "blocks" for complex analysis tasks like immune repertoire, single-cell, and gene expression data. Building on the legacy of its predecessor, MiXCR, Platforma also enables AI-powered selection for antibody/TCR candidates. The platform is designed to be accessible to scientists without a bioinformatics background, allowing for scientists to take control of their own discoveries and reduce time to insight.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Researchers wanting a solution to analyze, manage, and handle genome data

Audience

Academia and biotech/pharma companies working with NGS data

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

No images available

Pricing

Free
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 5.0 / 5
ease 5.0 / 5
features 5.0 / 5
design 5.0 / 5
support 5.0 / 5

Pros & Cons from Real Users

Pros

  • The UI/UX is very well done, especially the way users can tailor the order and amount of blocks to their analysis. With Platforma I can do the same analysis in a fraction of the time compared to command line tools. It's also free for academia, so that's a big plus!

Cons

  • One challenge I faced was identifying the correct file format during a demo run using public datasets.

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Broad Institute
United States
gatk.broadinstitute.org/hc/

Company Information

MiLaboratories
Founded: 2011
United States
platforma.bio

Alternatives

Alternatives

Cellenics

Cellenics

Biomage
VarSeq

VarSeq

Golden Helix
Partek Flow

Partek Flow

Partek
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench

QIAGEN Digital Insights
Emedgene

Emedgene

Illumina

Categories

Categories

Integrations

Docker

Integrations

Docker
Claim Genome Analysis Toolkit (GATK) and update features and information
Claim Genome Analysis Toolkit (GATK) and update features and information
Claim Platforma and update features and information
Claim Platforma and update features and information