Genome Analysis Toolkit (GATK)Broad Institute
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About
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data. Its scope is now expanding to include somatic short variant calling and to tackle copy number (CNV) and structural variation (SV). In addition to the variant callers themselves, the GATK also includes many utilities to perform related tasks such as processing and quality control of high-throughput sequencing data and bundles the popular Picard toolkit. These tools were primarily designed to process exomes and whole genomes generated with Illumina sequencing technology, but they can be adapted to handle a variety of other technologies and experimental designs.
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About
Genome Computer turns your genetic data into a portable, AI-ready .genome bundle you can download, keep, self-host, and explore with Genome Intelligence, Codex, Claude Code, Cursor, or any compatible tool. The open format restructures the same underlying data found in a VCF into a structured, queryable bundle, with variants stored in fast columnar tables alongside trait associations, supporting research, gene-level context, polygenic scores, pharmacogenomics, and clear provenance. Whole-genome sequencing orders are built from gVCF data, preserving both detected variants and confidently sequenced regions where no variant was found, while FASTQ files are available on request. Existing VCF or TXT files from other providers can also be converted, imputed where needed, annotated, scored, and prepared for AI interpretation. Genome Intelligence lets you ask questions grounded in your actual genetic data, compare new research with your genotypes, and explore genetics.
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Audience
Researchers wanting a solution to analyze, manage, and handle genome data
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Audience
Privacy-conscious individuals who want to explore and continually reinterpret their genetic data using AI
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Support
Phone Support
24/7 Live Support
Online
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Support
Phone Support
24/7 Live Support
Online
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API
Offers API
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API
Offers API
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Screenshots and Videos |
Screenshots and Videos |
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Pricing
Free
Free Version
Free Trial
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Pricing
$15 per month
Free Version
Free Trial
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Reviews/
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Reviews/
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Training
Documentation
Webinars
Live Online
In Person
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Training
Documentation
Webinars
Live Online
In Person
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Company InformationBroad Institute
United States
gatk.broadinstitute.org/hc/
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Company InformationGenome Computer
United States
genome.computer/
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