CufflinksCole Trapnell
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MapleMaplesoft
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About
Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.
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About
Maple is a software tool that combines a powerful mathematics engine with an interface that makes it easy to manage your calculations, so you can treat them like the valuable assets they are. Maple can handle all your mathematical needs, from performing simple calculations to advanced computations, visualizations, data analysis, and algorithm development. Maple provides an environment that helps you maximize the value of your calculation efforts. With Maple, you can easily validate, document, retain, reuse, and modify your calculations, reducing risk while saving time and effort in both current and future projects. Retain all the mathematics that went into your product in a single place, not scattered over notebooks, spreadsheets, napkins, and the project teams’ brains. Always have a record of where “that” number came from, even long after the project is over.
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Audience
Scientists requiring a solution to analyze their RNA-Seq samples
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Audience
Engineers searching for a calculation management solution
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Support
Phone Support
24/7 Live Support
Online
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Support
Phone Support
24/7 Live Support
Online
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API
Offers API
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API
Offers API
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Screenshots and Videos |
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Pricing
Free
Free Version
Free Trial
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Pricing
No information available.
Free Version
Free Trial
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Reviews/
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Reviews/
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Training
Documentation
Webinars
Live Online
In Person
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Training
Documentation
Webinars
Live Online
In Person
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Company InformationCole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/
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Company InformationMaplesoft
Founded: 1988
Canada
www.maplesoft.com/products/maple/professional/
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Integrations
No info available.
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Integrations
No info available.
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