Cufflinks

Cufflinks

Cole Trapnell
Maple

Maple

Maplesoft
+
+

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About

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols. Cufflinks was originally developed as part of a collaborative effort between the Laboratory for Mathematical and Computational Biology. In order to make it easy to install Cufflinks, we provide a few binary packages to save users from the occasionally frustrating process of building Cufflinks, which requires that you install the libraries. Cufflinks includes a number of tools for analyzing RNA-Seq experiments. Some of these tools can be run on their own, while others are pieces of a larger workflow.

About

Maple is a software tool that combines a powerful mathematics engine with an interface that makes it easy to manage your calculations, so you can treat them like the valuable assets they are. Maple can handle all your mathematical needs, from performing simple calculations to advanced computations, visualizations, data analysis, and algorithm development. Maple provides an environment that helps you maximize the value of your calculation efforts. With Maple, you can easily validate, document, retain, reuse, and modify your calculations, reducing risk while saving time and effort in both current and future projects. Retain all the mathematics that went into your product in a single place, not scattered over notebooks, spreadsheets, napkins, and the project teams’ brains. Always have a record of where “that” number came from, even long after the project is over.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Scientists requiring a solution to analyze their RNA-Seq samples

Audience

Engineers searching for a calculation management solution

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

Free
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Cole Trapnell
Founded: 2017
United States
cole-trapnell-lab.github.io/cufflinks/

Company Information

Maplesoft
Founded: 1988
Canada
www.maplesoft.com/products/maple/professional/

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Categories

Categories

Integrations

No info available.

Integrations

No info available.
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