AlphaGenome

AlphaGenome

Google DeepMind
Loupe Browser

Loupe Browser

10x Genomics
AlphaGenome Loupe Browser

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AlphaGenome:

About

AlphaGenome is a Google DeepMind API and Python toolkit for computational genomics research. Researchers submit DNA sequences or genetic variants to obtain model predictions about gene expression, RNA splicing, chromatin accessibility, transcription-factor binding, histone marks, and genome contacts. The API supports variant scoring and analyses of genomic regions in human and mouse data, with tutorials and reference materials for programmatic workflows. It can help researchers investigate how genetic changes may affect gene regulation and prioritize hypotheses for further study. Access is provided through a hosted API, with a Python package for local client-side use and notebook examples. AlphaGenome is intended for research and is not validated or approved for clinical or diagnostic use; its predictions should not be treated as clinical results.
Loupe Browser:

About

Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive functionality of the Loupe Browser interface uses a lung squamous cell carcinoma dataset. The workspace is centered around the view panel in which single points representing cell barcodes are shown in a variety of projections. Each point represents a single barcode, the vast majority of which correspond to a single cell. The default projection is the t-SNE plot created by the cell ranger pipeline, though other projections are available. You can drag the mouse over the cells to reposition the plot and use the mouse wheel or trackpad to zoom in and out. Cluster labels appear as you move your mouse over the plot, which is useful for data that has a high number of precomputed clusters.
AlphaGenome:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
Loupe Browser:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
AlphaGenome:

Audience

Computational biologists, genomics researchers, and research teams using programmatic DNA-sequence and genetic-variant analysis.
Loupe Browser:

Audience

Labs interested in a solution to manage, analyze, and visualize their research data
AlphaGenome:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
Loupe Browser:

Support

Phone Support Supported
24/7 Live Support Not Supported
Online Supported
AlphaGenome:

API

Offers API Supported
Loupe Browser:

API

Offers API Not Supported
AlphaGenome:

Screenshots and Videos

Loupe Browser:

Screenshots and Videos

AlphaGenome:

Pricing

Free for non-commercial research use, subject to terms. Commercial research access is in private preview; commercial and enterprise workflows are also offered through Google Cloud.
Free Version Supported
Free Trial Not Supported
Loupe Browser:

Pricing

No information available.
Free Version Not Supported
Free Trial Not Supported
AlphaGenome:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
Loupe Browser:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
AlphaGenome:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
Loupe Browser:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Supported
AlphaGenome:

Company Information

Google DeepMind
Founded: 2010
United Kingdom
deepmind.google/science/alphagenome/
Loupe Browser:

Company Information

10x Genomics
Founded: 2012
United States
www.10xgenomics.com/support/software/loupe-browser/latest
AlphaGenome:

Alternatives

AlphaGenome 2

AlphaGenome 2

Google DeepMind
Loupe Browser:

Alternatives

OmnibusX

OmnibusX

OmnibusX Company Limited
5.0 out of 5 stars
AlphaGenome:
Loupe Browser:
AlphaGenome:
VarSeq

VarSeq

Golden Helix
Loupe Browser:
Parse Biosciences Evercode

Parse Biosciences Evercode

Parse Biosciences
AlphaGenome:
GenomeStudio

GenomeStudio

Illumina
Loupe Browser:
AlphaGenome:
XetaBase

XetaBase

Zetta Genomics
Loupe Browser:
AlphaGenome:

Categories

Loupe Browser:

Categories

AlphaGenome:

Integrations

Google Antigravity Supported
Google Cloud Platform Supported
Google Colab Supported
Loupe Browser:

Integrations

Google Antigravity Not Supported
Google Cloud Platform Not Supported
Google Colab Not Supported
AlphaGenome:
Claim AlphaGenome and update features and information
Claim AlphaGenome and update features and information
Loupe Browser:
Claim Loupe Browser and update features and information
Claim Loupe Browser and update features and information