WellMeth

WellMeth is a integrated framework for Reduced Representation Bisulfite-Seq analysis

Features

Expands the Genotyping by Sequencing (GBS) approach to the detection of methylated cytosines in genomic DNA
Relies on the availability of high-quality reference genomes and for library construction double restriction digest with two methylation-insensitive enzymes is recommended
For paired-end short-read sequencing asymmetric forward- and reverse adapters will be applied with 4 to 6 nt long barcodes and a fixed number of random nucleotides (Unique Molecular Identifiers, UMIs) adjacent to the barcodes
UMI information will be used for post-alignment identification of PCR duplicates
Consists of four overlaying modules: Preprocessing, Mapping, Methylation variant detection and Differential methylation
Modules are interconnected by customizable wrapper scripts allowing fully automated execution
Fast, accurate and lightweight

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License

Creative Commons Attribution ShareAlike License V3.0

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Additional Project Details

Operating Systems

Linux

Languages

English

User Interface

Console/Terminal

Registered

2020-05-08

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