vcftools

A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/

Features

Parse VCF files
Output Population Genetic Statistics

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow vcftools

vcftools Web Site

nel_h2

Simply solve complex auth. Easy for devs to set up. Easy for non-devs to use.

Transform user access with Frontegg CIAM: login box, SSO, MFA, multi-tenancy, and 99.99% uptime.

Custom auth drains 25% of dev time and risks 62% more breaches, stalling enterprise deals. Frontegg platform delivers a simple login box, seamless authentication (SSO, MFA, passwordless), robust multi-tenancy, and a customizable Admin Portal. Integrate fast with the React SDK, meet compliance needs, and focus on innovation.

Start for Free

Rate This Project

User Ratings

4.7 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 3 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

User Reviews

Filter Reviews:

All

tyto81055 Posted 2018-08-24

Easy to use I hope vcftools can support more population genomics estimation
lparsons Posted 2012-05-07

A core set of tools for working with VCF files.
adam_kiezun Posted 2011-01-06

a must have for anyone dealing with VCFs

1 user found this review helpful.

Additional Project Details

Operating Systems

Linux, Mac

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C++, Perl

Related Categories

Perl Bio-Informatics Software, C++ Bio-Informatics Software

Registered

2009-09-22

Similar Business Software

Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
GenomeStudio

Visualize and analyze data generated on Illumina array platforms with GenomeStudio Software. This powerful solution supports the genotyping analysis of microarray data. Performance-optimized tools and a user-friendly graphical interface enable you to convert data into meaningful results quickly...

See Software
VarSeq

Simple, fast, and repeatable variant analysis software for gene panels, exomes, and whole genomes. VarSeq is an intuitive, integrated software solution for tertiary analysis. With VarSeq you can automate your workflows and analyze variants for gene panels, exomes, and whole genomes....

See Software
Illumina DRAGEN Secondary Analysis

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30...

See Software
Partek Flow

Partek bioinformatics software delivers powerful statistical and visualization tools in an easy-to-use interface. Researchers of all skill levels are empowered to explore genomic data quicker and easier than ever before. We turn data into discovery®. Pre-installed workflows and pipelines in our...

See Software
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software