UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). This kmax can be specified as any length or can be automatically determined by the longest repeated patterns found in the input sequence.

Features

  • Counting k-mers with multiple k's value at once.
  • Counting 1-mers to kmax specified by user.
  • Counting large k-mers in practical time
  • Support k limit up to any sizes
  • Finding maximum length of repeat patterns
  • Support DNA sequences, RNA sequences, and proteins sequences.
  • Practical running time and memory usage
  • Show spectrum of 1-mers to kmax-mers within seconds
  • Dumping 1-mers to kmax-mers patterns within seconds
  • Enable config minimum frequency

Project Samples

Show Progressing summarise multiple k-mers show spectrum of multiple k's

Project Activity

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Additional Project Details

Operating Systems

Mac

Intended Audience

Education, Engineering, Healthcare Industry, Science/Research

User Interface

Command-line, Console/Terminal

Registered

2025-07-12
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