UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.
Features
- Counting k-mers with multiple k's value at once.
- Counting 1-mers to kmax specified by user.
- Counting large k-mers in practical time
- Support k limit up to any sizes
- Finding maximum length of repeat patterns
- Support DNA sequences, RNA sequences, and proteins sequences.
- Practical running time and memory usage
- Show spectrum of 1-mers to kmax-mers within seconds
- Dumping 1-mers to kmax-mers patterns within seconds
- Enable configuring minimum frequency for counting
- Separating singleton k-mers from repeats k-mers
Categories
Bio-InformaticsLicense
Other LicenseFollow UniversalMer
Other Useful Business Software
Our Free Plans just got better! | Auth0
You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Rate This Project
Login To Rate This Project
User Reviews
-
easy to use