UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.

Features

  • Counting k-mers with multiple k's value at once.
  • Counting 1-mers to kmax specified by user.
  • Counting large k-mers in practical time
  • Support k limit up to any sizes
  • Finding maximum length of repeat patterns
  • Support DNA sequences, RNA sequences, and proteins sequences.
  • Practical running time and memory usage
  • Show spectrum of 1-mers to kmax-mers within seconds
  • Dumping 1-mers to kmax-mers patterns within seconds
  • Enable configuring minimum frequency for counting
  • Separating singleton k-mers from repeats k-mers

Project Samples

Project Activity

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Categories

Bio-Informatics

License

Other License

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User Reviews

  • easy to use
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Additional Project Details

Operating Systems

Mac, Windows

Intended Audience

Science/Research, Engineering

User Interface

Console/Terminal, Command-line

Programming Language

C++, C

Related Categories

C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2023-05-28