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Name	Modified	Size	InfoDownloads / Week
Parent folder
README.markdown	2016-08-03	3.9 kB
umol-r804-win32-20150524.zip	2016-03-04	52.5 MB	0
umol-doc-r804.zip	2015-08-20	2.6 MB	0
umol-r804-osx-20150524.zip	2015-05-24	63.1 MB	0
umol-r804-linux64-20150524.tar.gz	2015-05-24	56.2 MB	0
Totals: 5 Items		174.4 MB	0

Files description

UnityMol-r804 MDDriver (Interactive Molecular Dynamics Simulations)

umol-r804-win32-20150524.zip -- Zip archive of UnityMol r804 executable for Windows 32 bits
umol-r804-osx-20150524.zip -- Zip archive of UnityMol r804 executable for MAC OS X 10.7+
umol-r804-linux64-20150524.tar.gz -- Tarball of UnityMol r804 executable for Linux 64 bits
umol-doc-r804.zip -- Zip archive of UnityMol r804 Doxygen documentation

UnityMol r804 README

UnityMol is a molecular viewer and prototyping platform for the Unity3D game engine developped by Marc Baaden's team in Paris (Lv et al., 2013). It includes HyperBalls designed to visualize molecular structures using GPU graphics card capabilities based on shaders (GLSL or Cg). It can read Protein Data Bank (PDB) files, Cytoscape networks, OpenDX maps and Wavefront OBJ meshes.

More information on http://unitymol.sourceforge.net

Features

HyperBalls and Lit sphere artistic texturing of surfaces
MDDriver plugin for connection to molecular dynamics simulations
Specific representations for carbohydrates and polysaccharides
HiRE-RNA PDB files custom representations
Screen space effects from Unity (Blur, Glow, ..)
Animated electric field lines
Surfaces with cut planes

Citations

Z. Lv, A. Tek, F. Da Silva, C. Empereur-mot, M. Chavent and M. Baaden: Game on, Science - how video game technology may help biologists tackle visualization challenges, PLoS ONE (2013) 8(3):e57990.
S. Perez, T. Tubiana, A. Imberty and M. Baaden: Three-Dimensional Representations of Complex Carbohydrates and Polysaccharides. SweetUnityMol: A Video Game Based Computer Graphic Software, Glycobiology (2014).

M. Chavent, A. Vanel, A. Tek, B. Levy, S. Robert, B. Raffin, M. Baaden: GPU-accelerated atom and dynamic bond visualization using HyperBalls, a unified algorithm for balls, sticks and hyperboloids; J Comput Chem (2011) 32, 2924.
M. Chavent, B. Levy, M. Krone, K. Bidmon, J. P. Nomine, T. Ertl and M. Baaden: GPU-powered tools boost molecular visualization; Brief Bioinformatics (2011)

Known Bugs and Issues

tickets * Linux version bug: the file open dialog does not allow to choose a file or directory. Investigation of this bug is ongoing. Sorry for the inconvenience. * Windows version issue: depending on graphics card and windows version you may need to force OpenGL mode for proper representations, in particular of the HyperBalls shaders * Windows version issue: when both a surface and a hyperballs-shaded structure is present, the depth of the objects is not properly handled.