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Name	Modified	Size	InfoDownloads / Week
Parent folder
README.markdown	2016-08-03	4.3 kB
umol_mac_160413.zip	2013-05-20	61.5 MB	0
umol_web_160413.zip	2013-04-16	37.9 MB	0
umol_win64_160413.zip	2013-04-16	61.8 MB	0
umol_win32_160413.zip	2013-04-16	60.7 MB	0
umol_linux_160413.zip	2013-04-16	62.7 MB	0
umol_linux64_160413.zip	2013-04-16	63.6 MB	0
umol_src080413.tgz	2013-04-08	110.5 MB	0
umol_doc080413.tgz	2013-04-07	19.2 MB	0
Totals: 9 Items		478.1 MB	0

Files

umol_src080413.tgz -- gzipped tar archive of the UnityMol sourcecode of our paper in PLoS One. Compatible with Unity3D v4.x
umol_doc080413.tgz -- gzipped tar archive of the UnityMol development documentation generated with DoxyGen. Courtesy of Axel Viala.
umol_mac_160413.zip -- current UnityMol MacOS executable (most thoroughly tested version).
umol_win32_160413.zip -- current UnityMol executable for Windows 32bit.
umol_win64_160413.zip -- current UnityMol executable for Windows 64bit.
umol_linux_160413.zip -- current UnityMol 32-bit Linux executable (issue with file open dialog!).
umol_linux64_160413.zip -- current UnityMol 64-bit Linux executable (issue with file open dialog!).
umol_web_160413.zip -- current UnityMol webbrowser plugin (Mac and Windows). Can currently be tested at http://www.shaman.ibpc.fr/umolweb/

UnityMol v0.9.1 README

$Id: README.markdown,v 1.7 2013/04/16 22:42:02 baaden Exp baaden $

UnityMol is a molecular viewer and prototyping platform for the Unity3D game engine developped by Marc Baaden's team in Paris (Lv et al., 2013). It includes HyperBalls designed to visualize molecular structures using GPU graphics card capabilities based on shaders (GLSL or Cg). It can read Protein Data Bank (PDB) files, Cytoscape networks, OpenDX maps and Wavefront OBJ meshes.

More information on http://unitymol.sourceforge.net

Features

Lit sphere artistic texturing of surfaces and HyperBalls
Screen space effects from Unity (Blur, Glow, ..)
Animated electric field lines
(Simple) surfaces with cut planes
specific representations for carbohydrates and polysaccharides
description to be completed soon

Citations

Z. Lv, A. Tek, F. Da Silva, C. Empereur-mot, M. Chavent and M. Baaden: Game on, Science - how video game technology may help biologists tackle visualization challenges, PLoS ONE (2013) 8(3):e57990.
S. Perez, T. Tubiana, A. Imberty and M. Baaden: Three-Dimensional Representations of Complex Carbohydrates and Polysaccharides. SweetUnityMol: A Video Game Based Computer Graphic Software, Glycobiology (2014).

M. Chavent, A. Vanel, A. Tek, B. Levy, S. Robert, B. Raffin, M. Baaden: GPU-accelerated atom and dynamic bond visualization using HyperBalls, a unified algorithm for balls, sticks and hyperboloids; J Comput Chem (2011) 32, 2924.
M. Chavent, B. Levy, M. Krone, K. Bidmon, J. P. Nomine, T. Ertl and M. Baaden: GPU-powered tools boost molecular visualization; Brief Bioinformatics (2011)

Known Bugs and Issues

Linux version bug: the file open dialog does not allow to choose a file or directory. Investigation of this bug is ongoing. Sorry for the inconvenience.
Windows version issue: depending on graphics card and windows version you may need to force OpenGL mode for proper representations, in particular of the HyperBalls shaders
Windows version issue: when both a surface and a hyperballs-shaded structure is present, the depth of the objects is not properly handled.
this list is to be updated and completed soon