A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform.
TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are:
-Bisulfite mapping and methylation calling in one single step
-Supports single-end read alignments
-Alignment seed length, number of mismatches etc. are adjustable
-The output gives heatmap with categories.
Features
- Bisulfite Sequencing data analysis
- Single end read aligner
- generates heatmap
Categories
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