svdetectcnv.sh

shell script to run SVDetect with baseline adjustment

Brought to you by: ccpan

Add a Review

Downloads: 0 This Week

Last Update: 2019-10-05

Download

Get an email when there's a new version of svdetectcnv.sh

svdetectcnv.sh is a shell script to run SVDetect CNV mode. In addition to the original outputs of SVDetect, the script also outputs an adjusted bed.graph with baseline adjusted to the average Log2Ratio of a certain chromosome or all chromosomes, and a sorted density file.
**Update***
New version uses the splitted bam produced by exome_test.sh and allows for multithreading to split bam.

Project Activity

See All Activity >

Follow svdetectcnv.sh

svdetectcnv.sh Web Site

Other Useful Business Software

Keep company data safe with Chrome Enterprise

Protect your business with AI policies and data loss prevention in the browser

Make AI work your way with Chrome Enterprise. Block unapproved sites and set custom data controls that align with your company's policies.

Download Chrome

Rate This Project

User Reviews

Be the first to post a review of svdetectcnv.sh!

Additional Project Details

Registered

2015-12-18

Report inappropriate content

Recommended Projects

K8055 Driver - Provides /proc/k8055
Velleman K8055 USB Experiment Interface Board driver. This driver provides a /proc interface which allows the inputs and outputs of the K8055 to be accessed as if they were files, making the K8055 accessible from any programming language and the shell. In addition to the /proc interface a joystick/input device is created for each K8055, Optionally a (user provided) script can be executed by the driver when it detects a change on one of the inputs or outputs.
Raman baseline
Raman baseline correction algorithm for biological samples
picard
A set of tools for working with high-throughput sequencing data
crossmap
convert genome coordinates betweeen assemblies
JGraphite
JGraphite is a simple and easy to use application that converts photos into black & white images with just a few clicks. Brightness, vignetting and tone curve can be easily adjusted for best results.