SVDetect

A tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Features

LAST RELEASE: SVDetect r0.8b (01/22/2013)
GALAXY VERSION for developers:
http://toolshed.g2.bx.psu.edu/repository/view_repository?sort=name&id=47649aac90870cfb

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow SVDetect

SVDetect Web Site

Other Useful Business Software

Stay in Flow. Let Zenflow Handle the Heavy Lifting.

Your AI engineering control center. Zenflow turns specs into shipped features using parallel agents and multi-repo intelligence.

Zenflow is your engineering control center, turning specs into shipped features. Parallel agents handle coding, testing, and refactoring with real repo context. Multi-agent workflows remove bottlenecks and automate routine work so developers stay focused and in flow.

Try free now

Rate This Project

User Reviews

Be the first to post a review of SVDetect!

Additional Project Details

Operating Systems

Linux

Languages

English

Intended Audience

Advanced End Users, Science/Research

User Interface

Command-line

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2009-12-23

Similar Business Software

Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
GenomeBrowse

This free tool delivers stunning visualizations of your genomic data that give you the power to see what is occurring at each base pair in your samples. GenomeBrowse runs as a native desktop application on your computer. No longer do you have to sacrifice speed and interface quality to obtain a...

See Software
Galaxy

Galaxy is an open source, web-based platform for data-intensive biomedical research. If you are new to Galaxy start here or consult our help resources. You can install your own Galaxy by following the tutorial and choosing from thousands of tools from the tool shed. This instance of Galaxy is...

See Software
Illumina DRAGEN Secondary Analysis

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30...

See Software