Requirements
SOAPindel2 needs two input data sources:
The reference sequence file used to align the reads. It must be in Fasta format.
The files with read-alignments. SOAPindel2 accepts only Indexed BAM formats as input. Users can use the tools/soap2sam.cc to convert SOAP format to SAM format and use samtools convert SAM to indexed BAM. SOAPindel2 can guess the library insert sizes by itself.
Sequencing platform:Theoretically, SOAPindel2 is designed for all paired-end sequencing data because it doesn’t consider any qualities for now. So it works for both Ilumina GA data and 454 data, but we’ve only tested it on Ilumina GA data.

Project Activity

See All Activity >

Follow SOAPindel2

SOAPindel2 Web Site

Other Useful Business Software
$300 Free Credits for Your Google Cloud Projects Icon
$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.
Start Free Trial
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of SOAPindel2!

Additional Project Details

Registered

2012-02-24
Report inappropriate content